Taxonomy:

Phylum
  • Rhodophyta
Subphylum
  • Eurhodophytina
Class
  • Florideophyceae
Subclass
  • Rhodymeniophycidae
Order
  • Ceramiales
Family
  • Rhodomelaceae
Subfamily
  • Alsidieae

References

Articles

External Links


See also:

Downloads BLAST search View dataset information

Annotations Explorer: Digenea simplex OPJ-A18

Overview

Assembly Details

Assembly name Digenea simplex OPJ-A18
AlgaeDB ID Dig_simp_OPJ-A18
Strain/Intraspecific name OPJ-A18
Source NCBI
Source ID GCA_004798425.1
NCBI Txid 945030
Bioproject PRJNA509898
Year 2019
Assembly type Hologenome
Assembly level Contig
Sequencing technology Oxford Nanopore PromethION; Illumina NovaSeq
Assembly method minimap2+miniasm; pilon

Assembly Statistics

Assembly Length (bp) 299,321,041
Assembly BUSCO score C: 74.5 (S: 72.5 D: 2.0) F: 5.1 M: 20.4
Protein BUSCO score C: 73.4 (S: 71.0 D: 2.4) F: 7.5 M: 19.1
Assembly coverage 30.0x
GC content 43.34
Gene count 49,327
Contigs 8,254
Contig N50 57,705

Biosample Details

Biosample SAMN10485948
Location Japan: Okinawa Prefecture, Onna

No annotations are available for this assembly











Feedback

Is this information correct? Do you have data you want to add to this database? Got any questions? If so, please contact me at Lachlan.McKinnie@research.usc.edu.au






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